Access to RNA-seq reads a possibility?

2nd (Invited Participants) Challenge
1

Would it be possible to have access to the RNA-seq reads? Even a single time point (Day 0) may be useful. Thanks!

3

Hi William,

You should have access to the PBMC gene expression data (both raw read counts and TPMs).
Training data: Index of /downloads/cmipb_challenge_datasets/current/2nd_challenge/raw_datasets/training_data/
Test data: Index of /downloads/cmipb_challenge_datasets/current/2nd_challenge/raw_datasets/prediction_data/

Please let us know if you have any issues.

5

Hi @William-Gibson, We are unable to provide access to contestants with RNA-seq reads due to the potential presence of subject privacy information within the sequencing data. As mentioned in a previous post by Lisa, RNAseq data is made available through tpm and raw counts. Thanks!